Do you have a SQL 2012 Exemption for the process. You might not have a predefined process:
First Select the Endpiont Protection SQL 2008 and click copy
SMS/SCCM, Beyond Application Deployment is a blog by Matthew Hudson covering SMS 2003, SCCM 2007, 2012 and beyond package deployment. Here you will find hints, tips, and tricks to help with managing your infrastructure. It will focus mainly on Reg files, Batch, VbScript, WMI, and possibly other methods.